EVGENIY DUBROVIN [Группа СЗМ]

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====EVGENIY DUBROVIN====
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Doctor of Science (habilitation) in Physics and Mathematics (2018)\\
**Current Position**\\
Leading Research Associate, Chair of Physics of Polymers and Crystals, Faculty of Physics, Lomonosov Moscow State University\\
**Scope of scientific interests:** Scanning probe microscopy of nucleic acids, proteins, nucleoproteins, viruses, bacterial cells. Self-organization of biopolymers on the surface\\
**Email**\\
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===Awards:===
Moscow government grant, 2001\\
Scholarship of the President of Russian Federation for PhD students, 2004-2005\\
Moscow grant for PhD students in the field of science and technologies, 2005\\
LG Chem Scholarship for PhD students, 2006\\
Academia Europaea Prize for young Russian scientists, 2009\\
M.V. Lomonosov Moscow State University scholarship, 2010, 2012, 2013\\
===The list of publications===
  - E.V. Dubrovin, L.A. Dadinova, M.V. Petoukhov, E.Yu. Soshinskaya, A.A. Mozhaev, D.V. Klinov, T.E. Schäffer, E.V. Shtykova, O.V. Batishchev. Spatial Organization of Dps and DNA–Dps Complexes. Journal of Molecular Biology, 2021, 166930. [[https://doi.org/10.1016/j.jmb.2021.166930|DOI]]
  - E.V. Dubrovin, D.V. Klinov, T.E. Schäffer. Evidence of (anti)metamorphic properties of modified graphitic surfaces obtained in real time at a single-molecule level. Colloids and Surfaces B: Biointerfaces, 2020, 193, 111077. [[https://doi.org/10.1016/j.colsurfb.2020.111077|DOI]]
  - A.P. Tolstova, E.V. Dubrovin. Influence of Pixelization on Height Measurement in Atomic Force Microscopy. Ultramicroscopy, 2019, 207, 112846. [[https://doi.org/10.1016/j.ultramic.2019.112846|DOI]]     
  - A.S. Erofeev, P.V. Gorelkin, D.V. Kolesov, G.A. Kiselev, E.V. Dubrovin, I.V. Yaminsky. Label-free sensitive detection of influenza virus using PZT discs with a synthetic sialylglycopolymer receptor layer. Royal Society Open Science, 2019, 6, 190255. [[https://doi.org/10.1098/rsos.190255|DOI]]
  - E.V. Dubrovin, N.A. Barinov, T.E. Schäffer, and D.V. Klinov. In Situ Single-Molecule AFM Investigation of Surface-Induced Fibrinogen Unfolding on Graphite. Langmuir, 2019, 35, 9732-9739. [[https://doi.org/10.1021/acs.langmuir.9b01178|DOI]]
  - N.A. Barinov, I.I. Vlasova, A.V. Sokolov, V.A. Kostevich, E.V. Dubrovin, D.V. Klinov. High-resolution atomic force microscopy visualization of metalloproteins and their complexes. Biochimica et Biophysica Acta - General Subjects, 2018, 1862, 2862-2868. [[http://dx.doi.org/10.1016/j.bbagen.2018.09.008|DOI]]
  - A.M. Varizhuk, A.D. Protopopova, V.B. Tsvetkov, N.A. Barinov, V.V. Podgorsky, M.V. Tankevich, M.A. Vlasenok, V.V. Severov, I.P. Smirnov, E.V. Dubrovin, D.V. Klinov, G.E. Pozmogova. Polymorphism of G4 associates: from stacks to wires via interlocks. Nucleic Acids Research, 2018, 46, 8978-8992. [[http://dx.doi.org/10.1093/nar/gky729|DOI]]
  - E.V. Dubrovin, N.A. Barinov, D.V. Klinov. High resolution atomic force microscopy visualization of fibrinogen unfolding on modified graphite. Microscopy and Microanalysis, 2018, 24, S1, 1236-1237. [[http://dx.doi.org/10.1017/S1431927618006669|DOI]]
  - N.A. Barinov, A.P. Protopopova, E.V. Dubrovin, D.V. Klinov. Thermal denaturation of fibrinogen visualized by single-molecule atomic force microscopy. Colloids and Surfaces B: Biointerfaces, 2018, 167, 370-376. [[http://dx.doi.org/10.1016/j.colsurfb.2018.04.037|DOI]]
  - E.V. Dubrovin, M. Schächtele, D.V. Klinov, and T.E. Schäffer. Time-lapsed single biomolecule atomic force microscopy investigation on modified graphite in solution. Langmuir, 2017, 33, 10027-10034. [[http://dx.doi.org/10.1021/acs.langmuir.7b02220|DOI]]
  - E.V. Dubrovin, M. Schächtele, and T.E. Schäffer. Nanotemplate-directed DNA segmental thermal motion. RSC Advances, 2016, 6, 79584-79592. [[http://dx.doi.org/10.1039/C6RA14383K|DOI]]
  - N.A. Barinov, V.V. Prokhorov, E.V. Dubrovin, D.V. Klinov. AFM visualization at a single-molecule level of denaturated states of proteins on graphite. Colloids and Surfaces B: Biointerfaces, 2016, 146, 777-784. [[http://dx.doi.org/10.1016/j.colsurfb.2016.07.014|DOI]]
  - O.N. Koroleva, E.V. Dubrovin, I.V. Yaminsky, V.L. Drutsa. Effect of DNA bending on transcriptional interference in the systems of closely spaced convergent promoters. Biochimica et Biophysica Acta - General Subjects, 2016, 1860, 2086–2096. [[http://dx.doi.org/10.1016/j.bbagen.2016.06.026|DOI]]
  - O.N. Koroleva, E.V. Dubrovin, A.P. Tolstova, N.V. Kuzmina, T.V. Laptinskaya, I.V. Yaminsky, V.L. Drutsa. A hypothetical hierarchical mechanism of self-assembly of Escherichia coli RNA polymerase σ<sup>70</sup> subunit. Soft Matter, 2016, 12, 1974-1982. [[http://dx.doi.org/10.1039/C5SM02934A|DOI]]
  - P.V. Gorelkin, A.S. Erofeev, G.A. Kiselev, D.V. Kolesov, E.V. Dubrovin, I.V. Yaminsky. Synthetic sialylglycopolymer receptor for virus detection using cantilever-based sensors. The Analyst, 2015, 140, 6131-6137. [[http://dx.doi.org/10.1039/C5AN01102G|DOI]]
  - A.P. Tolstova, E.V. Dubrovin, O.N. Koroleva. Investigation of σ<sup>70</sup> subunit structure dependence in //Escherichia coli// RNA polymerase on ionic strength by the molecular dynamics simulation method. Biophysics, 2015, 60, 865–869. [[http://dx.doi.org/10.1134/S0006350915060251|DOI]]
  - E.V. Dubrovin, G.V. Presnova, M.Yu Rubtsova, A.M. Egorov, V.G. Grigorenko, I.V. Yaminsky. The Use of Atomic Force Microscopy for 3D Analysis of Nucleic Acid Hybridization on Microarrays.  Acta naturae, 2015, 7, 108–114. [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463420/pdf/AN20758251-25-108.pdf|PDF]]
  - E.V. Dubrovin, S. Speller, I.V. Yaminsky. Statistical analysis of molecular nanotemplate driven DNA adsorption on graphite. Langmuir, 2014, 30, 15423–15432. [[http://dx.doi.org/10.1021/la5041773|DOI]]
  - E.V. Dubrovin, G.V. Presnova, M.Y. Rubtsova, V.G. Grigorenko, A.I. Ivanin, A.M. Egorov, I.V. Yaminsky. Implementation of scanning probe microscopy for the solution of molecular diagnostics tasks. Biomeditsinskaia khimiia, 2014, 60, 543-547 (in Russian).
  - O.N. Koroleva, E.V. Dubrovin, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. The Model of Amyloid Aggregation of //Escherichia coli// RNA Polymerase σ<sup>70</sup> Subunit Based on AFM Data and In Vitro Assays. Cell Biochemistry and Biophysics, 2013, 66, 623-636. [[http://dx.doi.org/10.1007/s12013-012-9507-2|DOI]]
  - E.V. Dubrovin, A.V. Popova, S.V. Kraevskiy, S.G. Ignatov, T.E. Ignatyuk, I.V. Yaminsky, N.V. Volozhantsev. Atomic Force Microscopy Analysis of the //Acinetobacter baumannii// Bacteriophage AP22 Lytic Cycle. PLOS ONE, 2012, 7(10): e47348. [[http://dx.doi.org/10.1371/journal.pone.0047348|DOI]]
  - E.V. Dubrovin, O.N. Koroleva, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. AFM study of //Escherichia coli// RNA polymerase σ<sup>70</sup> subunit aggregation. Nanomedicine: Nanotechnology, Biology and Medicine, 2012, 8, 54-62. [[http://dx.doi.org/10.1016/j.nano.2011.05.014|DOI]]
  - E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, I.V. Yaminsky and S.G. Ignatov. AFM Specific Identification of Bacterial Cell Fragments on Biofunctional Surfaces. The Open Microbiology Journal, 2012, 6, 22-28. [[http://dx.doi.org/10.2174/1874285801206010022|DOI]]
  - M.V. Arkhipenko, E.K. Petrova, N.A. Nikitin, A.D. Protopopova, E.V. Dubrovin, I.V. Yaminskii, N.P. Rodionova, O. V. Karpova, J. G. Atabekov. Characteristics of Artificial Virus-like Particles Assembled in vitro from Potato Virus X Coat Protein and Foreign Viral RNAs. Acta Naturae, 2011 3, 40-46. {{:en:actanaturae_eng.pdf|Full text (pdf)}}
  - I.V. Yaminskii, P.V. Gorelkin, E.V. Dubrovin. Nanoanalytics for medicine. Biophysics, 2011, 56, 905-909. [[http://dx.doi.org/10.1134/S0006350911050277|DOI]]
  - Yu.M. Efremov, D.V. Bagrov, E.V. Dubrovin, K.V. Shaitan, I.V. Yaminsky. Atomic Force Microscopy of Animal Cells: Advances and Prospects. Biophysics, 2011, 56, 257-267. [[http://dx.doi.org/10.1134/S0006350911020096|DOI]]
  - E.V. Dubrovin, J.W. Gerritsen, J.Zivkovic, I.V. Yaminsky, S.Speller. The effect of underlying octadecylamine monolayer on the DNA conformation on the graphite surface. Colloids and Surfaces B: Biointerfaces, 2010, 76, 63-69. [[http://dx.doi.org/10.1016/j.colsurfb.2009.10.011|DOI]]
  - E.V. Dubrovin, T.N. Murugova, K.A. Motovilov, L.S. Yaguzhinsky, I.V. Yaminsky. Application of atomic force microscopy technology to a structural analysis of the mitochondrial inner membrane. Nanotechnologies in Russia, 2009, 4, 876-880. [[http://dx.doi.org/10.1134/S1995078009110160|DOI]]
  - E.V. Dubrovin, A.G. Voloshin, S.V. Kraevsky, T.E. Ignatyuk, S.S. Abramchuk, I.V. Yaminsky, and S.G. Ignatov. Atomic force microscopy investigation of phage infection of bacteria. Langmuir, 2008, 24, 13068-13074. [[http://dx.doi.org/10.1021/la8022612|DOI]]
  - E.V. Dubrovin, S.N. Staritsyn, S.A. Yakovenko, I.V. Yaminsky. Self-assembly effect during the adsorption of polynucleotides on stearic acid Langmuir-Blodgett monolayer. Biomacromolecules, 2007, 8, 2258-2261. [[http://dx.doi.org/10.1021/bm0702096|DOI]]
  - E.V. Dubrovin, Yu.F. Drygin, V.K. Novikov, I.V. Yaminsky. Atomic force microscopy as a tool of inspection of viral infection. Nanomedicine: Nanotechnology, Biology and Medicine, 3(2007), 128-131. [[http://dx.doi.org/10.1016/j.nano.2007.01.005|DOI]]
  - E.V. Dubrovin, V.E. Maschenko, V.M. Puzikov, A.V. Semenov, I.V. Yaminsky. Cooperative growth of tetrahedral nanocarbon films. Doklady Physical Chemistry. 403, № 5, 2005, 150-153. [[http://dx.doi.org/10.1007/s10634-005-0047-y|DOI]]
  - S.N. Staritsyn, S.A. Yakovenko, A.M. Lomonosov, E.V. Dubrovin, I.V. Yaminsky. Intermolecular recognition on polymerized nucleolipids contained Langmuir monolayers. Bulletin of Moscow University. Physics. Astronomy, № 4, 2005, 49-53. [[http://www.phys.msu.ru/upload/iblock/326/05-4-49.pdf|Full text in russian (pdf)]]
  - E.V. Dubrovin, I.A. Kirik, M.M. Babykin, I.V. Yaminsky. Atomic force microscopy study of pili in the cyanobacterium Synechocystis sp. PCC 6803. In “From Cells to Proteins: Imaging Nature across Dimensions” ed. by Evangelista, V.; Barsanti, L.; Passarelli, V.; Gualtieri, P. Springer, NATO Security Through Science Series, Sub-Series B: Physics and Biophysics, 3, 2005, 405-414. [[http://dx.doi.org/10.1007/1-4020-3616-7|DOI]]
  - E.V. Dubrovin, M.N. Kirikova, V.K. Novikov, Yu.F. Drygin, and I. V. Yaminsky. Study of the Peculiarities of Adhesion of Tobacco Mosaic Virus by Atomic Force Microscopy. Colloid Journal, 66 (2004) №6, pp.673-678. [[http://dx.doi.org/10.1007/s10595-005-0048-x|DOI]]
  - M.A. Skabkin, O.I. Kiselyova, K.G. Chernov, A.V. Sorokin, E.V. Dubrovin, I.V. Yaminsky, V.D. Vasiliev and L.P. Ovchinnikov. Structural organization of mRNA complexes with major core mRNP protein YB-1. Nucleic Acids Research, 32 (2004), pp. 5621–5635. [[http://nar.oxfordjournals.org/cgi/reprint/32/18/5621|
Full text(pdf)]]
  - S.N. Staritsyn, V.V. Mamashin, V.V. Zakharychev, I.V. Yaminsky, E.V. Dubrovin, A.M. Lomonosov, V.A. Tverdislov, and S.A. Yakovenko. Mixed Monolayers of Amphiphil-modified Nucleic Bases and Diynoic Acids. I. Phase States at Air-Water Interface and in Langmuir-Blodgett Films. Biophysics, 49 (2004) №4, pp. 586-595. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15458246&query_hl=1|Abstract]]
  - D.V. Klinov, E.V. Dubrovin, and I.V. Yaminsky. Scanning Probe Microscopy of DNA on Mica and Graphite. AIP Conference Proceedings, 696 (2003), pp. 452-456. [[http://dx.doi.org/10.1063/1.1639735|DOI]]
  - D.V.Klinov, E.V.Dubrovin, I.V.Yaminsky. Substrate for Scanning Probe Microscopy of DNA: HOPG versus mica. Physics of Low-Dimensional Structures, 3-4 (2003), pp. 119-124.
  - A.V.Bolshakova, E.V.Dubrovin, A.S.Filonov, M.O.Gallyamov, D.Yu.Gavrilko, O.I.Kiselyova, A.M.Lomonosov, E.B.Meshkov, I.V.Yaminsky. Open Experimental Internet Practical Studies in Nanoscopy of Polymers and Biomacromolecules. Physics of Low-Dimensional Structures, 3-4 (2003), pp. 113-118.
  - E.V. Dubrovin, V.E.Mashenko, V.M. Puzikov, A.V. Semenov, R.K. Chuzhko, I.V. Yaminsky. Recombination Emission from Tetrahedral Nanocarbon Films. Doklady Physical Chemistry. 388 (2003) Nos. 4-6, February, pp.25-28. [[http://dx.doi.org/10.1023/A:1022579129422|DOI]]
  - M.O.Gallyamov, E.V.Dubrovin, and I.V.Yaminsky. Micromechanics of Nucleic Acids. Physics of Low-Dimensional Structures, 5-6 (2002), pp. 7-11.
===Patents===
  - Method for //Escherichia coli// bacteria identification by detecting their fragments by atomic force microscopy: Patent 2437937 Russian Federation: IPC C12Q 1/00 G01N 13/00 B01D 15/38 / E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, O.N. Perovskaya, I.V. Yaminsky, S.G. Ignatov; application 2010116544/10, 27.04.2010; date of publication: 27.12.2011 Bull. 36.
  - Device for identification of nucleotide sequences: Patent 2537267 Russian Federation: IPC C12Q 1/68 / A.S. Erofeev, I.V. Yaminsky, E.V. Dubrovin, A.A. Gaskarov, A.I. Ivanin, M.Y. Rubtsova, G.V. Presnova, M.M. Ulyashova, V.G. Grigirenko, A.M. Egorov; application 2013130178/10; 03.07.2013; date of publication: 20.05.2014, Bull. 14.