Differences
This shows you the differences between two versions of the page.
|
en:евгeний_дубpoвин [2019/01/23 20:37] Евгений Дубровин [EVGENIY DUBROVIN] |
en:евгeний_дубpoвин [2021/03/27 08:58] (current) Евгений Дубровин [The list of publications] |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| ====EVGENIY DUBROVIN==== | ====EVGENIY DUBROVIN==== | ||
| - | {{:me9.jpg?200|}}\\ | + | {{:me9.jpg?100|}}\\ |
| Doctor of Science (habilitation) in Physics and Mathematics (2018)\\ | Doctor of Science (habilitation) in Physics and Mathematics (2018)\\ | ||
| **Current Position**\\ | **Current Position**\\ | ||
| - | Senior Research Associate, Chair of Physics of Polymers and Crystals, Faculty of Physics, Lomonosov Moscow State University\\ | + | Leading Research Associate, Chair of Physics of Polymers and Crystals, Faculty of Physics, Lomonosov Moscow State University\\ |
| **Scope of scientific interests:** Scanning probe microscopy of nucleic acids, proteins, nucleoproteins, viruses, bacterial cells. Self-organization of biopolymers on the surface\\ | **Scope of scientific interests:** Scanning probe microscopy of nucleic acids, proteins, nucleoproteins, viruses, bacterial cells. Self-organization of biopolymers on the surface\\ | ||
| **Email**\\ | **Email**\\ | ||
| Line 15: | Line 15: | ||
| M.V. Lomonosov Moscow State University scholarship, 2010, 2012, 2013\\ | M.V. Lomonosov Moscow State University scholarship, 2010, 2012, 2013\\ | ||
| ===The list of publications=== | ===The list of publications=== | ||
| - | - N.A. Barinov, I.I. Vlasova, A.V. Sokolov, V.A. Kostevich, E.V. Dubrovin, D.V. Klinov. High-resolution atomic force microscopy visualization of metalloproteins and their complexes. Biochimica et Biophysica Acta - General Subjects, 2018, 1862, 2862-2868. [[http://dx.doi.org/10.1016/j.bbagen.2018.09.008|DOI]] | + | - E.V. Dubrovin, L.A. Dadinova, M.V. Petoukhov, E.Yu. Soshinskaya, A.A. Mozhaev, D.V. Klinov, T.E. Schäffer, E.V. Shtykova, O.V. Batishchev. Spatial Organization of Dps and DNA–Dps Complexes. Journal of Molecular Biology, 2021, 166930. [[https://doi.org/10.1016/j.jmb.2021.166930|DOI]] |
| - | - A.M. Varizhuk, A.D. Protopopova, V.B. Tsvetkov, N.A. Barinov, V.V. Podgorsky, M.V. Tankevich, M.A. Vlasenok, V.V. Severov, I.P. Smirnov, E.V. Dubrovin, D.V. Klinov, G.E. Pozmogova. Polymorphism of G4 associates: from stacks to wires via interlocks. Nucleic Acids Research, 2018. [[http://dx.doi.org/10.1093/nar/gky729|DOI]] | + | - E.V. Dubrovin, D.V. Klinov, T.E. Schäffer. Evidence of (anti)metamorphic properties of modified graphitic surfaces obtained in real time at a single-molecule level. Colloids and Surfaces B: Biointerfaces, 2020, 193, 111077. [[https://doi.org/10.1016/j.colsurfb.2020.111077|DOI]] |
| + | - A.P. Tolstova, E.V. Dubrovin. Influence of Pixelization on Height Measurement in Atomic Force Microscopy. Ultramicroscopy, 2019, 207, 112846. [[https://doi.org/10.1016/j.ultramic.2019.112846|DOI]] | ||
| + | - A.S. Erofeev, P.V. Gorelkin, D.V. Kolesov, G.A. Kiselev, E.V. Dubrovin, I.V. Yaminsky. Label-free sensitive detection of influenza virus using PZT discs with a synthetic sialylglycopolymer receptor layer. Royal Society Open Science, 2019, 6, 190255. [[https://doi.org/10.1098/rsos.190255|DOI]] | ||
| + | - E.V. Dubrovin, N.A. Barinov, T.E. Schäffer, and D.V. Klinov. In Situ Single-Molecule AFM Investigation of Surface-Induced Fibrinogen Unfolding on Graphite. Langmuir, 2019, 35, 9732-9739. [[https://doi.org/10.1021/acs.langmuir.9b01178|DOI]] | ||
| + | - N.A. Barinov, I.I. Vlasova, A.V. Sokolov, V.A. Kostevich, E.V. Dubrovin, D.V. Klinov. High-resolution atomic force microscopy visualization of metalloproteins and their complexes. Biochimica et Biophysica Acta - General Subjects, 2018, 1862, 2862-2868. [[http://dx.doi.org/10.1016/j.bbagen.2018.09.008|DOI]] | ||
| + | - A.M. Varizhuk, A.D. Protopopova, V.B. Tsvetkov, N.A. Barinov, V.V. Podgorsky, M.V. Tankevich, M.A. Vlasenok, V.V. Severov, I.P. Smirnov, E.V. Dubrovin, D.V. Klinov, G.E. Pozmogova. Polymorphism of G4 associates: from stacks to wires via interlocks. Nucleic Acids Research, 2018, 46, 8978-8992. [[http://dx.doi.org/10.1093/nar/gky729|DOI]] | ||
| - E.V. Dubrovin, N.A. Barinov, D.V. Klinov. High resolution atomic force microscopy visualization of fibrinogen unfolding on modified graphite. Microscopy and Microanalysis, 2018, 24, S1, 1236-1237. [[http://dx.doi.org/10.1017/S1431927618006669|DOI]] | - E.V. Dubrovin, N.A. Barinov, D.V. Klinov. High resolution atomic force microscopy visualization of fibrinogen unfolding on modified graphite. Microscopy and Microanalysis, 2018, 24, S1, 1236-1237. [[http://dx.doi.org/10.1017/S1431927618006669|DOI]] | ||
| - N.A. Barinov, A.P. Protopopova, E.V. Dubrovin, D.V. Klinov. Thermal denaturation of fibrinogen visualized by single-molecule atomic force microscopy. Colloids and Surfaces B: Biointerfaces, 2018, 167, 370-376. [[http://dx.doi.org/10.1016/j.colsurfb.2018.04.037|DOI]] | - N.A. Barinov, A.P. Protopopova, E.V. Dubrovin, D.V. Klinov. Thermal denaturation of fibrinogen visualized by single-molecule atomic force microscopy. Colloids and Surfaces B: Biointerfaces, 2018, 167, 370-376. [[http://dx.doi.org/10.1016/j.colsurfb.2018.04.037|DOI]] | ||
| Line 25: | Line 30: | ||
| - O.N. Koroleva, E.V. Dubrovin, A.P. Tolstova, N.V. Kuzmina, T.V. Laptinskaya, I.V. Yaminsky, V.L. Drutsa. A hypothetical hierarchical mechanism of self-assembly of Escherichia coli RNA polymerase σ<sup>70</sup> subunit. Soft Matter, 2016, 12, 1974-1982. [[http://dx.doi.org/10.1039/C5SM02934A|DOI]] | - O.N. Koroleva, E.V. Dubrovin, A.P. Tolstova, N.V. Kuzmina, T.V. Laptinskaya, I.V. Yaminsky, V.L. Drutsa. A hypothetical hierarchical mechanism of self-assembly of Escherichia coli RNA polymerase σ<sup>70</sup> subunit. Soft Matter, 2016, 12, 1974-1982. [[http://dx.doi.org/10.1039/C5SM02934A|DOI]] | ||
| - P.V. Gorelkin, A.S. Erofeev, G.A. Kiselev, D.V. Kolesov, E.V. Dubrovin, I.V. Yaminsky. Synthetic sialylglycopolymer receptor for virus detection using cantilever-based sensors. The Analyst, 2015, 140, 6131-6137. [[http://dx.doi.org/10.1039/C5AN01102G|DOI]] | - P.V. Gorelkin, A.S. Erofeev, G.A. Kiselev, D.V. Kolesov, E.V. Dubrovin, I.V. Yaminsky. Synthetic sialylglycopolymer receptor for virus detection using cantilever-based sensors. The Analyst, 2015, 140, 6131-6137. [[http://dx.doi.org/10.1039/C5AN01102G|DOI]] | ||
| - | - A.P. Tolstova, E.V. Dubrovin, O.N. Koroleva. Investigation of σ<sup>70</sup> subunit structure dependence in //Escherichia coli// RNA polymerase on ionic strength by the molecular dynamics simulation method. Biophysics, 2015, 60, 865–869. [[http://dx.doi.org/10.1134/S0006350915060251|DOI]] | + | - A.P. Tolstova, E.V. Dubrovin, O.N. Koroleva. Investigation of σ<sup>70</sup> subunit structure dependence in //Escherichia coli// RNA polymerase on ionic strength by the molecula |
| - | - E.V. Dubrovin, G.V. Presnova, M.Yu Rubtsova, A.M. Egorov, V.G. Grigorenko, I.V. Yaminsky. The Use of Atomic Force Microscopy for 3D Analysis of Nucleic Acid Hybridization on Microarrays. Acta naturae, 2015, 7, 108–114. [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463420/pdf/AN20758251-25-108.pdf|PDF]] | + | |
| - | - E.V. Dubrovin, S. Speller, I.V. Yaminsky. Statistical analysis of molecular nanotemplate driven DNA adsorption on graphite. Langmuir, 2014, 30, 15423–15432. [[http://dx.doi.org/10.1021/la5041773|DOI]] | + | |
| - | - E.V. Dubrovin, G.V. Presnova, M.Y. Rubtsova, V.G. Grigorenko, A.I. Ivanin, A.M. Egorov, I.V. Yaminsky. Implementation of scanning probe microscopy for the solution of molecular diagnostics tasks. Biomeditsinskaia khimiia, 2014, 60, 543-547 (in Russian). | + | |
| - | - O.N. Koroleva, E.V. Dubrovin, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. The Model of Amyloid Aggregation of //Escherichia coli// RNA Polymerase σ<sup>70</sup> Subunit Based on AFM Data and In Vitro Assays. Cell Biochemistry and Biophysics, 2013, 66, 623-636. [[http://dx.doi.org/10.1007/s12013-012-9507-2|DOI]] | + | |
| - | - E.V. Dubrovin, A.V. Popova, S.V. Kraevskiy, S.G. Ignatov, T.E. Ignatyuk, I.V. Yaminsky, N.V. Volozhantsev. Atomic Force Microscopy Analysis of the //Acinetobacter baumannii// Bacteriophage AP22 Lytic Cycle. PLOS ONE, 2012, 7(10): e47348. [[http://dx.doi.org/10.1371/journal.pone.0047348|DOI]] | + | |
| - | - E.V. Dubrovin, O.N. Koroleva, Yu.A. Khodak, N.V. Kuzmina, I.V. Yaminsky, V.L. Drutsa. AFM study of //Escherichia coli// RNA polymerase σ<sup>70</sup> subunit aggregation. Nanomedicine: Nanotechnology, Biology and Medicine, 2012, 8, 54-62. [[http://dx.doi.org/10.1016/j.nano.2011.05.014|DOI]] | + | |
| - | - E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, I.V. Yaminsky and S.G. Ignatov. AFM Specific Identification of Bacterial Cell Fragments on Biofunctional Surfaces. The Open Microbiology Journal, 2012, 6, 22-28. [[http://dx.doi.org/10.2174/1874285801206010022|DOI]] | + | |
| - | - M.V. Arkhipenko, E.K. Petrova, N.A. Nikitin, A.D. Protopopova, E.V. Dubrovin, I.V. Yaminskii, N.P. Rodionova, O. V. Karpova, J. G. Atabekov. Characteristics of Artificial Virus-like Particles Assembled in vitro from Potato Virus X Coat Protein and Foreign Viral RNAs. Acta Naturae, 2011 3, 40-46. {{:en:actanaturae_eng.pdf|Full text (pdf)}} | + | |
| - | - I.V. Yaminskii, P.V. Gorelkin, E.V. Dubrovin. Nanoanalytics for medicine. Biophysics, 2011, 56, 905-909. [[http://dx.doi.org/10.1134/S0006350911050277|DOI]] | + | |
| - | - Yu.M. Efremov, D.V. Bagrov, E.V. Dubrovin, K.V. Shaitan, I.V. Yaminsky. Atomic Force Microscopy of Animal Cells: Advances and Prospects. Biophysics, 2011, 56, 257-267. [[http://dx.doi.org/10.1134/S0006350911020096|DOI]] | + | |
| - | - E.V. Dubrovin, J.W. Gerritsen, J.Zivkovic, I.V. Yaminsky, S.Speller. The effect of underlying octadecylamine monolayer on the DNA conformation on the graphite surface. Colloids and Surfaces B: Biointerfaces, 2010, 76, 63-69. [[http://dx.doi.org/10.1016/j.colsurfb.2009.10.011|DOI]] | + | |
| - | - E.V. Dubrovin, T.N. Murugova, K.A. Motovilov, L.S. Yaguzhinsky, I.V. Yaminsky. Application of atomic force microscopy technology to a structural analysis of the mitochondrial inner membrane. Nanotechnologies in Russia, 2009, 4, 876-880. [[http://dx.doi.org/10.1134/S1995078009110160|DOI]] | + | |
| - | - E.V. Dubrovin, A.G. Voloshin, S.V. Kraevsky, T.E. Ignatyuk, S.S. Abramchuk, I.V. Yaminsky, and S.G. Ignatov. Atomic force microscopy investigation of phage infection of bacteria. Langmuir, 2008, 24, 13068-13074. [[http://dx.doi.org/10.1021/la8022612|DOI]] | + | |
| - | - E.V. Dubrovin, S.N. Staritsyn, S.A. Yakovenko, I.V. Yaminsky. Self-assembly effect during the adsorption of polynucleotides on stearic acid Langmuir-Blodgett monolayer. Biomacromolecules, 2007, 8, 2258-2261. [[http://dx.doi.org/10.1021/bm0702096|DOI]] | + | |
| - | - E.V. Dubrovin, Yu.F. Drygin, V.K. Novikov, I.V. Yaminsky. Atomic force microscopy as a tool of inspection of viral infection. Nanomedicine: Nanotechnology, Biology and Medicine, 3(2007), 128-131. [[http://dx.doi.org/10.1016/j.nano.2007.01.005|DOI]] | + | |
| - | - E.V. Dubrovin, V.E. Maschenko, V.M. Puzikov, A.V. Semenov, I.V. Yaminsky. Cooperative growth of tetrahedral nanocarbon films. Doklady Physical Chemistry. 403, № 5, 2005, 150-153. [[http://dx.doi.org/10.1007/s10634-005-0047-y|DOI]] | + | |
| - | - S.N. Staritsyn, S.A. Yakovenko, A.M. Lomonosov, E.V. Dubrovin, I.V. Yaminsky. Intermolecular recognition on polymerized nucleolipids contained Langmuir monolayers. Bulletin of Moscow University. Physics. Astronomy, № 4, 2005, 49-53. [[http://www.phys.msu.ru/upload/iblock/326/05-4-49.pdf|Full text in russian (pdf)]] | + | |
| - | - E.V. Dubrovin, I.A. Kirik, M.M. Babykin, I.V. Yaminsky. Atomic force microscopy study of pili in the cyanobacterium Synechocystis sp. PCC 6803. In “From Cells to Proteins: Imaging Nature across Dimensions” ed. by Evangelista, V.; Barsanti, L.; Passarelli, V.; Gualtieri, P. Springer, NATO Security Through Science Series, Sub-Series B: Physics and Biophysics, 3, 2005, 405-414. [[http://dx.doi.org/10.1007/1-4020-3616-7|DOI]] | + | |
| - | - E.V. Dubrovin, M.N. Kirikova, V.K. Novikov, Yu.F. Drygin, and I. V. Yaminsky. Study of the Peculiarities of Adhesion of Tobacco Mosaic Virus by Atomic Force Microscopy. Colloid Journal, 66 (2004) №6, pp.673-678. [[http://dx.doi.org/10.1007/s10595-005-0048-x|DOI]] | + | |
| - | - M.A. Skabkin, O.I. Kiselyova, K.G. Chernov, A.V. Sorokin, E.V. Dubrovin, I.V. Yaminsky, V.D. Vasiliev and L.P. Ovchinnikov. Structural organization of mRNA complexes with major core mRNP protein YB-1. Nucleic Acids Research, 32 (2004), pp. 5621–5635. [[http://nar.oxfordjournals.org/cgi/reprint/32/18/5621| | + | |
| - | Full text(pdf)]] | + | |
| - | - S.N. Staritsyn, V.V. Mamashin, V.V. Zakharychev, I.V. Yaminsky, E.V. Dubrovin, A.M. Lomonosov, V.A. Tverdislov, and S.A. Yakovenko. Mixed Monolayers of Amphiphil-modified Nucleic Bases and Diynoic Acids. I. Phase States at Air-Water Interface and in Langmuir-Blodgett Films. Biophysics, 49 (2004) №4, pp. 586-595. [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15458246&query_hl=1|Abstract]] | + | |
| - | - D.V. Klinov, E.V. Dubrovin, and I.V. Yaminsky. Scanning Probe Microscopy of DNA on Mica and Graphite. AIP Conference Proceedings, 696 (2003), pp. 452-456. [[http://dx.doi.org/10.1063/1.1639735|DOI]] | + | |
| - | - D.V.Klinov, E.V.Dubrovin, I.V.Yaminsky. Substrate for Scanning Probe Microscopy of DNA: HOPG versus mica. Physics of Low-Dimensional Structures, 3-4 (2003), pp. 119-124. | + | |
| - | - A.V.Bolshakova, E.V.Dubrovin, A.S.Filonov, M.O.Gallyamov, D.Yu.Gavrilko, O.I.Kiselyova, A.M.Lomonosov, E.B.Meshkov, I.V.Yaminsky. Open Experimental Internet Practical Studies in Nanoscopy of Polymers and Biomacromolecules. Physics of Low-Dimensional Structures, 3-4 (2003), pp. 113-118. | + | |
| - | - E.V. Dubrovin, V.E.Mashenko, V.M. Puzikov, A.V. Semenov, R.K. Chuzhko, I.V. Yaminsky. Recombination Emission from Tetrahedral Nanocarbon Films. Doklady Physical Chemistry. 388 (2003) Nos. 4-6, February, pp.25-28. [[http://dx.doi.org/10.1023/A:1022579129422|DOI]] | + | |
| - | - M.O.Gallyamov, E.V.Dubrovin, and I.V.Yaminsky. Micromechanics of Nucleic Acids. Physics of Low-Dimensional Structures, 5-6 (2002), pp. 7-11. | + | |
| ===Patents=== | ===Patents=== | ||
| - Method for //Escherichia coli// bacteria identification by detecting their fragments by atomic force microscopy: Patent 2437937 Russian Federation: IPC C12Q 1/00 G01N 13/00 B01D 15/38 / E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, O.N. Perovskaya, I.V. Yaminsky, S.G. Ignatov; application 2010116544/10, 27.04.2010; date of publication: 27.12.2011 Bull. 36. | - Method for //Escherichia coli// bacteria identification by detecting their fragments by atomic force microscopy: Patent 2437937 Russian Federation: IPC C12Q 1/00 G01N 13/00 B01D 15/38 / E.V. Dubrovin, G.N. Fedyukina, S.V. Kraevsky, T.E. Ignatyuk, O.N. Perovskaya, I.V. Yaminsky, S.G. Ignatov; application 2010116544/10, 27.04.2010; date of publication: 27.12.2011 Bull. 36. | ||
| - Device for identification of nucleotide sequences: Patent 2537267 Russian Federation: IPC C12Q 1/68 / A.S. Erofeev, I.V. Yaminsky, E.V. Dubrovin, A.A. Gaskarov, A.I. Ivanin, M.Y. Rubtsova, G.V. Presnova, M.M. Ulyashova, V.G. Grigirenko, A.M. Egorov; application 2013130178/10; 03.07.2013; date of publication: 20.05.2014, Bull. 14. | - Device for identification of nucleotide sequences: Patent 2537267 Russian Federation: IPC C12Q 1/68 / A.S. Erofeev, I.V. Yaminsky, E.V. Dubrovin, A.A. Gaskarov, A.I. Ivanin, M.Y. Rubtsova, G.V. Presnova, M.M. Ulyashova, V.G. Grigirenko, A.M. Egorov; application 2013130178/10; 03.07.2013; date of publication: 20.05.2014, Bull. 14. | ||
